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Gene : AT3G16650 A. thaliana

Gene ID  ? AT3G16650
Brief Description  Transducin/WD40 repeat-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: pleiotropic regulatory locus 1 (TAIR:AT4G15900.1).  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • Pleiotropic regulatory locus 2,
  • PRL2

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Identification and characterization of a dominant suppressor of prl1 revealed a regulatory, gain-of-function mutation in PLEIOTROPIC REGULATORY LOCUS 2 (PRL2), a close homolog of PRL1. 22813545

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G16650 0.5kb upstream 0.5kb upstream 4921   true Chr3: 5670518-5675438
AT3G16650 0.5kb upstream 0.5kb upstream 500   false Chr3: 5670518-5671017
AT3G16650 0.5kb downstream 0.5kb downstream 4921   true Chr3: 5671018-5675938
AT3G16650 0.5kb downstream 0.5kb downstream 500   false Chr3: 5675439-5675938
AT3G16650 1.0kb upstream 1.0kb upstream 5421   true Chr3: 5670018-5675438
AT3G16650 1.0kb upstream 1.0kb upstream 1000   false Chr3: 5670018-5671017
AT3G16650 1.0kb downstream 1.0kb downstream 5421   true Chr3: 5671018-5676438
AT3G16650 1.0kb downstream 1.0kb downstream 1000   false Chr3: 5675439-5676438
AT3G16650 3.0kb upstream 3.0kb upstream 7421   true Chr3: 5668018-5675438
AT3G16650 3.0kb upstream 3.0kb upstream 3000   false Chr3: 5668018-5671017
AT3G16650 3.0kb downstream 3.0kb downstream 7421   true Chr3: 5671018-5678438
AT3G16650 3.0kb downstream 3.0kb downstream 3000   false Chr3: 5675439-5678438

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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Homology

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139