help  | faq  | software  | ARAPORT

Gene : AT4G26950 A. thaliana

Gene ID  ? AT4G26950
Brief Description  senescence regulator (Protein of unknown function, DUF584)  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Protein of unknown function, DUF584; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT4G04630.1).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G26950 0.5kb upstream 0.5kb upstream 1608   true Chr4: 13533391-13534998
AT4G26950 0.5kb upstream 0.5kb upstream 500   false Chr4: 13534499-13534998
AT4G26950 0.5kb downstream 0.5kb downstream 1608   true Chr4: 13532891-13534498
AT4G26950 0.5kb downstream 0.5kb downstream 500   false Chr4: 13532891-13533390
AT4G26950 1.0kb upstream 1.0kb upstream 2108   true Chr4: 13533391-13535498
AT4G26950 1.0kb upstream 1.0kb upstream 1000   false Chr4: 13534499-13535498
AT4G26950 1.0kb downstream 1.0kb downstream 2108   true Chr4: 13532391-13534498
AT4G26950 1.0kb downstream 1.0kb downstream 1000   false Chr4: 13532391-13533390
AT4G26950 3.0kb upstream 3.0kb upstream 4108   true Chr4: 13533391-13537498
AT4G26950 3.0kb upstream 3.0kb upstream 3000   false Chr4: 13534499-13537498
AT4G26950 3.0kb downstream 3.0kb downstream 4108   true Chr4: 13530391-13534498
AT4G26950 3.0kb downstream 3.0kb downstream 3000   false Chr4: 13530391-13533390

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0