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Gene : EBF2 A. thaliana

Gene ID  ? AT5G25350
Brief Description  EIN3-binding F box protein 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? EIN3-binding F box protein 2 (EBF2); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 1 (TAIR:AT2G25490.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway.  Source: TAIR, Jun 30, 2015.
Name  ? EIN3-binding F box protein 2

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data show that through control of EIN3/EIL1 levels, EBF1 and EBF2 fine-tune ethylene responses by repressing signaling in the absence of hormone, dampening signaling at high concentrations, and promoting rapid recovery after ethylene levels dissipate. 17307926
An ethylene signal elevates the levels of EIN3, which directly binds and activates the EBF2 gene promoter. 18466304

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G25350 0.5kb upstream 0.5kb upstream 3598   true Chr5: 8794252-8797849
AT5G25350 0.5kb upstream 0.5kb upstream 500   false Chr5: 8797350-8797849
AT5G25350 0.5kb downstream 0.5kb downstream 3598   true Chr5: 8793752-8797349
AT5G25350 0.5kb downstream 0.5kb downstream 500   false Chr5: 8793752-8794251
AT5G25350 1.0kb upstream 1.0kb upstream 4098   true Chr5: 8794252-8798349
AT5G25350 1.0kb upstream 1.0kb upstream 1000   false Chr5: 8797350-8798349
AT5G25350 1.0kb downstream 1.0kb downstream 4098   true Chr5: 8793252-8797349
AT5G25350 1.0kb downstream 1.0kb downstream 1000   false Chr5: 8793252-8794251
AT5G25350 3.0kb upstream 3.0kb upstream 6098   true Chr5: 8794252-8800349
AT5G25350 3.0kb upstream 3.0kb upstream 3000   false Chr5: 8797350-8800349
AT5G25350 3.0kb downstream 3.0kb downstream 6098   true Chr5: 8791252-8797349
AT5G25350 3.0kb downstream 3.0kb downstream 3000   false Chr5: 8791252-8794251

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04075 Plant hormone signal transduction

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139