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Gene : AT2G27080 A. thaliana

Gene ID  ? AT2G27080
Brief Description  Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT5G21130.1).  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Mutational analysis shows that NHL13 is required for plant immunity, as the nhl13 mutant plant displayed enhanced disease susceptibility. [NHL13] 26206852

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G27080 0.5kb upstream 0.5kb upstream 4072   true Chr2: 11563433-11567504
AT2G27080 0.5kb upstream 0.5kb upstream 500   false Chr2: 11563433-11563932
AT2G27080 0.5kb downstream 0.5kb downstream 4072   true Chr2: 11563933-11568004
AT2G27080 0.5kb downstream 0.5kb downstream 500   false Chr2: 11567505-11568004
AT2G27080 1.0kb upstream 1.0kb upstream 4572   true Chr2: 11562933-11567504
AT2G27080 1.0kb upstream 1.0kb upstream 1000   false Chr2: 11562933-11563932
AT2G27080 1.0kb downstream 1.0kb downstream 4572   true Chr2: 11563933-11568504
AT2G27080 1.0kb downstream 1.0kb downstream 1000   false Chr2: 11567505-11568504
AT2G27080 3.0kb upstream 3.0kb upstream 6572   true Chr2: 11560933-11567504
AT2G27080 3.0kb upstream 3.0kb upstream 3000   false Chr2: 11560933-11563932
AT2G27080 3.0kb downstream 3.0kb downstream 6572   true Chr2: 11563933-11570504
AT2G27080 3.0kb downstream 3.0kb downstream 3000   false Chr2: 11567505-11570504

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Homology

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139