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Gene : AT4G08800 A. thaliana

Gene ID  ? AT4G08800
Brief Description  Protein kinase superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: casein kinase I-like 5 (TAIR:AT2G19470.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G08800 0.5kb upstream 0.5kb upstream 2286   true Chr4: 5613634-5615919
AT4G08800 0.5kb upstream 0.5kb upstream 500   false Chr4: 5613634-5614133
AT4G08800 0.5kb downstream 0.5kb downstream 2286   true Chr4: 5614134-5616419
AT4G08800 0.5kb downstream 0.5kb downstream 500   false Chr4: 5615920-5616419
AT4G08800 1.0kb upstream 1.0kb upstream 2786   true Chr4: 5613134-5615919
AT4G08800 1.0kb upstream 1.0kb upstream 1000   false Chr4: 5613134-5614133
AT4G08800 1.0kb downstream 1.0kb downstream 2786   true Chr4: 5614134-5616919
AT4G08800 1.0kb downstream 1.0kb downstream 1000   false Chr4: 5615920-5616919
AT4G08800 3.0kb upstream 3.0kb upstream 4786   true Chr4: 5611134-5615919
AT4G08800 3.0kb upstream 3.0kb upstream 3000   false Chr4: 5611134-5614133
AT4G08800 3.0kb downstream 3.0kb downstream 4786   true Chr4: 5614134-5618919
AT4G08800 3.0kb downstream 3.0kb downstream 3000   false Chr4: 5615920-5618919

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0