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Gene : AT3G26020 A. thaliana
Gene ID  ? AT3G26020
Brief Description  Protein phosphatase 2A regulatory B subunit family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Protein phosphatase 2A regulatory B subunit family protein; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: cytosol, nucleus, protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A regulatory B subunit family protein (TAIR:AT1G13460.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes protein phosphatase 2A (PP2A) B'eta subunit. Targeted to nucleus and cytosol.  Source: TAIR, Jun 30, 2015.
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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G26020 0.5kb upstream 0.5kb upstream 3786   true Chr3: 9513145-9516930
AT3G26020 0.5kb upstream 0.5kb upstream 500   false Chr3: 9513145-9513644
AT3G26020 0.5kb downstream 0.5kb downstream 3786   true Chr3: 9513645-9517430
AT3G26020 0.5kb downstream 0.5kb downstream 500   false Chr3: 9516931-9517430
AT3G26020 1.0kb upstream 1.0kb upstream 4286   true Chr3: 9512645-9516930
AT3G26020 1.0kb upstream 1.0kb upstream 1000   false Chr3: 9512645-9513644
AT3G26020 1.0kb downstream 1.0kb downstream 4286   true Chr3: 9513645-9517930
AT3G26020 1.0kb downstream 1.0kb downstream 1000   false Chr3: 9516931-9517930
AT3G26020 3.0kb upstream 3.0kb upstream 6286   true Chr3: 9510645-9516930
AT3G26020 3.0kb upstream 3.0kb upstream 3000   false Chr3: 9510645-9513644
AT3G26020 3.0kb downstream 3.0kb downstream 6286   true Chr3: 9513645-9519930
AT3G26020 3.0kb downstream 3.0kb downstream 3000   false Chr3: 9516931-9519930

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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139
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