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Gene : AT2G17760 A. thaliana

Gene ID  ? AT2G17760
Brief Description  Eukaryotic aspartyl protease family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT4G35880.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G17760 0.5kb upstream 0.5kb upstream 3772   true Chr2: 7712734-7716505
AT2G17760 0.5kb upstream 0.5kb upstream 500   false Chr2: 7712734-7713233
AT2G17760 0.5kb downstream 0.5kb downstream 3772   true Chr2: 7713234-7717005
AT2G17760 0.5kb downstream 0.5kb downstream 500   false Chr2: 7716506-7717005
AT2G17760 1.0kb upstream 1.0kb upstream 4272   true Chr2: 7712234-7716505
AT2G17760 1.0kb upstream 1.0kb upstream 1000   false Chr2: 7712234-7713233
AT2G17760 1.0kb downstream 1.0kb downstream 4272   true Chr2: 7713234-7717505
AT2G17760 1.0kb downstream 1.0kb downstream 1000   false Chr2: 7716506-7717505
AT2G17760 3.0kb upstream 3.0kb upstream 6272   true Chr2: 7710234-7716505
AT2G17760 3.0kb upstream 3.0kb upstream 3000   false Chr2: 7710234-7713233
AT2G17760 3.0kb downstream 3.0kb downstream 6272   true Chr2: 7713234-7719505
AT2G17760 3.0kb downstream 3.0kb downstream 3000   false Chr2: 7716506-7719505

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139