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Gene : AT2G31210 A. thaliana

Gene ID  ? AT2G31210
Brief Description  basic helix-loop-helix (bHLH) DNA-binding superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G06170.2).  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
bHLH010, bHLH089 and bHLH091 together are important for the normal transcriptome of the developing Arabidopsis anther, possibly by forming a feed-forward loop with DYT1. 26216374

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G31210 0.5kb upstream 0.5kb upstream 2635   true Chr2: 13295643-13298277
AT2G31210 0.5kb upstream 0.5kb upstream 500   false Chr2: 13295643-13296142
AT2G31210 0.5kb downstream 0.5kb downstream 2635   true Chr2: 13296143-13298777
AT2G31210 0.5kb downstream 0.5kb downstream 500   false Chr2: 13298278-13298777
AT2G31210 1.0kb upstream 1.0kb upstream 3135   true Chr2: 13295143-13298277
AT2G31210 1.0kb upstream 1.0kb upstream 1000   false Chr2: 13295143-13296142
AT2G31210 1.0kb downstream 1.0kb downstream 3135   true Chr2: 13296143-13299277
AT2G31210 1.0kb downstream 1.0kb downstream 1000   false Chr2: 13298278-13299277
AT2G31210 3.0kb upstream 3.0kb upstream 5135   true Chr2: 13293143-13298277
AT2G31210 3.0kb upstream 3.0kb upstream 3000   false Chr2: 13293143-13296142
AT2G31210 3.0kb downstream 3.0kb downstream 5135   true Chr2: 13296143-13301277
AT2G31210 3.0kb downstream 3.0kb downstream 3000   false Chr2: 13298278-13301277

Proteins

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Function

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

RNA-seq Expression

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Interactions

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Homology

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Stocks

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Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139