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Gene : AT3G55677 A. thaliana

Gene ID  ? AT3G55677
Brief Description  Plant self-incompatibility protein S1 family  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT3G55672.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G55677 0.5kb upstream 0.5kb upstream 1094   true Chr3: 20663483-20664576
AT3G55677 0.5kb upstream 0.5kb upstream 500   false Chr3: 20663483-20663982
AT3G55677 0.5kb downstream 0.5kb downstream 1094   true Chr3: 20663983-20665076
AT3G55677 0.5kb downstream 0.5kb downstream 500   false Chr3: 20664577-20665076
AT3G55677 1.0kb upstream 1.0kb upstream 1594   true Chr3: 20662983-20664576
AT3G55677 1.0kb upstream 1.0kb upstream 1000   false Chr3: 20662983-20663982
AT3G55677 1.0kb downstream 1.0kb downstream 1594   true Chr3: 20663983-20665576
AT3G55677 1.0kb downstream 1.0kb downstream 1000   false Chr3: 20664577-20665576
AT3G55677 3.0kb upstream 3.0kb upstream 3594   true Chr3: 20660983-20664576
AT3G55677 3.0kb upstream 3.0kb upstream 3000   false Chr3: 20660983-20663982
AT3G55677 3.0kb downstream 3.0kb downstream 3594   true Chr3: 20663983-20667576
AT3G55677 3.0kb downstream 3.0kb downstream 3000   false Chr3: 20664577-20667576

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0 Pathways

Data Source: KEGG

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Expression

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0