help  | faq  | software  | ARAPORT

Gene : AT3G55670 A. thaliana

Gene ID  ? AT3G55670
Brief Description  F-box/FBD/LRR protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G55670 0.5kb upstream 0.5kb upstream 1991   true Chr3: 20658013-20660003
AT3G55670 0.5kb upstream 0.5kb upstream 500   false Chr3: 20659504-20660003
AT3G55670 0.5kb downstream 0.5kb downstream 1991   true Chr3: 20657513-20659503
AT3G55670 0.5kb downstream 0.5kb downstream 500   false Chr3: 20657513-20658012
AT3G55670 1.0kb upstream 1.0kb upstream 2491   true Chr3: 20658013-20660503
AT3G55670 1.0kb upstream 1.0kb upstream 1000   false Chr3: 20659504-20660503
AT3G55670 1.0kb downstream 1.0kb downstream 2491   true Chr3: 20657013-20659503
AT3G55670 1.0kb downstream 1.0kb downstream 1000   false Chr3: 20657013-20658012
AT3G55670 3.0kb upstream 3.0kb upstream 4491   true Chr3: 20658013-20662503
AT3G55670 3.0kb upstream 3.0kb upstream 3000   false Chr3: 20659504-20662503
AT3G55670 3.0kb downstream 3.0kb downstream 4491   true Chr3: 20655013-20659503
AT3G55670 3.0kb downstream 3.0kb downstream 3000   false Chr3: 20655013-20658012

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

6 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07