Genomics
Sequence Feature Displayer
Gene Structure Displayer
J Browse Displayer
Overlapping Features Displayer
12 Flanking Regions
Flank size: from most upstream transcription start site, or most downstream transcription stop site
Region Name | Flank Size | Direction | Length | Gene Included? | Chromosome Location |
---|---|---|---|---|---|
AT3G04200 0.5kb upstream | 0.5kb | upstream |
1499
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true | Chr3: 1103616-1105114 |
AT3G04200 0.5kb upstream | 0.5kb | upstream |
500
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false | Chr3: 1104615-1105114 |
AT3G04200 0.5kb downstream | 0.5kb | downstream |
1499
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true | Chr3: 1103116-1104614 |
AT3G04200 0.5kb downstream | 0.5kb | downstream |
500
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false | Chr3: 1103116-1103615 |
AT3G04200 1.0kb upstream | 1.0kb | upstream |
1999
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true | Chr3: 1103616-1105614 |
AT3G04200 1.0kb upstream | 1.0kb | upstream |
1000
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false | Chr3: 1104615-1105614 |
AT3G04200 1.0kb downstream | 1.0kb | downstream |
1999
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true | Chr3: 1102616-1104614 |
AT3G04200 1.0kb downstream | 1.0kb | downstream |
1000
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false | Chr3: 1102616-1103615 |
AT3G04200 3.0kb upstream | 3.0kb | upstream |
3999
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true | Chr3: 1103616-1107614 |
AT3G04200 3.0kb upstream | 3.0kb | upstream |
3000
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false | Chr3: 1104615-1107614 |
AT3G04200 3.0kb downstream | 3.0kb | downstream |
3999
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true | Chr3: 1100616-1104614 |
AT3G04200 3.0kb downstream | 3.0kb | downstream |
3000
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false | Chr3: 1100616-1103615 |
Expression
Plant Ontology Displayer
Bar Efp Browser Displayer
Array Expression
RNA-seq Expression
Co-expression
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8 Data Sets
Name | Description | Version |
---|---|---|
BAR Annotations Lookup | Mapping(s) between AGI locus and Affy Probeset identifier | 10/08/2013 |
Genome Annotation | Araport11 protein-coding, non-coding and transposable element genes | Araport11 (06/2016) |
RNA-seq expression | Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon | Araport11 (06/2016) |
PubMed to gene mapping | Curated associations between publications and NCBI Gene records | 8/12/2016 |
GO Annotation from TAIR | GO annotations assigned by TAIR | 8/01/2016 |
PO Annotation from TAIR | Literature-based annotations of genes to Plant Ontology (PO) terms | 06/30/2015 |
Swiss-Prot data set | High-quality, manually annotated, non-redundant protein sequence database | 2016_07 |
Panther data set | PANTHER paralogs from Arabidopsis | 11.0 |