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Gene : AT3G04200 A. thaliana

Gene ID  ? AT3G04200
Brief Description  RmlC-like cupins superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: stem, male gametophyte, root, leaf; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G05950.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G04200 0.5kb upstream 0.5kb upstream 1499   true Chr3: 1103616-1105114
AT3G04200 0.5kb upstream 0.5kb upstream 500   false Chr3: 1104615-1105114
AT3G04200 0.5kb downstream 0.5kb downstream 1499   true Chr3: 1103116-1104614
AT3G04200 0.5kb downstream 0.5kb downstream 500   false Chr3: 1103116-1103615
AT3G04200 1.0kb upstream 1.0kb upstream 1999   true Chr3: 1103616-1105614
AT3G04200 1.0kb upstream 1.0kb upstream 1000   false Chr3: 1104615-1105614
AT3G04200 1.0kb downstream 1.0kb downstream 1999   true Chr3: 1102616-1104614
AT3G04200 1.0kb downstream 1.0kb downstream 1000   false Chr3: 1102616-1103615
AT3G04200 3.0kb upstream 3.0kb upstream 3999   true Chr3: 1103616-1107614
AT3G04200 3.0kb upstream 3.0kb upstream 3000   false Chr3: 1104615-1107614
AT3G04200 3.0kb downstream 3.0kb downstream 3999   true Chr3: 1100616-1104614
AT3G04200 3.0kb downstream 3.0kb downstream 3000   false Chr3: 1100616-1103615

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Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0