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Gene : AT3G10970 A. thaliana

Gene ID  ? AT3G10970
Brief Description  Haloacid dehalogenase-like hydrolase (HAD) superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G11570.2).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G10970 0.5kb upstream 0.5kb upstream 4093   true Chr3: 3432811-3436903
AT3G10970 0.5kb upstream 0.5kb upstream 500   false Chr3: 3436404-3436903
AT3G10970 0.5kb downstream 0.5kb downstream 4093   true Chr3: 3432311-3436403
AT3G10970 0.5kb downstream 0.5kb downstream 500   false Chr3: 3432311-3432810
AT3G10970 1.0kb upstream 1.0kb upstream 4593   true Chr3: 3432811-3437403
AT3G10970 1.0kb upstream 1.0kb upstream 1000   false Chr3: 3436404-3437403
AT3G10970 1.0kb downstream 1.0kb downstream 4593   true Chr3: 3431811-3436403
AT3G10970 1.0kb downstream 1.0kb downstream 1000   false Chr3: 3431811-3432810
AT3G10970 3.0kb upstream 3.0kb upstream 6593   true Chr3: 3432811-3439403
AT3G10970 3.0kb upstream 3.0kb upstream 3000   false Chr3: 3436404-3439403
AT3G10970 3.0kb downstream 3.0kb downstream 6593   true Chr3: 3429811-3436403
AT3G10970 3.0kb downstream 3.0kb downstream 3000   false Chr3: 3429811-3432810

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139