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Gene : AT3G47070 A. thaliana

Gene ID  ? AT3G47070
Brief Description  thylakoid soluble phosphoprotein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G47070 0.5kb upstream 0.5kb upstream 1642   true Chr3: 17336592-17338233
AT3G47070 0.5kb upstream 0.5kb upstream 500   false Chr3: 17337734-17338233
AT3G47070 0.5kb downstream 0.5kb downstream 1642   true Chr3: 17336092-17337733
AT3G47070 0.5kb downstream 0.5kb downstream 500   false Chr3: 17336092-17336591
AT3G47070 1.0kb upstream 1.0kb upstream 2142   true Chr3: 17336592-17338733
AT3G47070 1.0kb upstream 1.0kb upstream 1000   false Chr3: 17337734-17338733
AT3G47070 1.0kb downstream 1.0kb downstream 2142   true Chr3: 17335592-17337733
AT3G47070 1.0kb downstream 1.0kb downstream 1000   false Chr3: 17335592-17336591
AT3G47070 3.0kb upstream 3.0kb upstream 4142   true Chr3: 17336592-17340733
AT3G47070 3.0kb upstream 3.0kb upstream 3000   false Chr3: 17337734-17340733
AT3G47070 3.0kb downstream 3.0kb downstream 4142   true Chr3: 17333592-17337733
AT3G47070 3.0kb downstream 3.0kb downstream 3000   false Chr3: 17333592-17336591

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0 Pathways

Data Source: KEGG

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Expression

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016