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Gene : AT5G25320 A. thaliana

Gene ID  ? AT5G25320
Brief Description  ACT-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ACT-like superfamily protein; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 3 (TAIR:AT1G76990.5).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G25320 0.5kb upstream 0.5kb upstream 3151   true Chr5: 8787196-8790346
AT5G25320 0.5kb upstream 0.5kb upstream 500   false Chr5: 8789847-8790346
AT5G25320 0.5kb downstream 0.5kb downstream 3151   true Chr5: 8786696-8789846
AT5G25320 0.5kb downstream 0.5kb downstream 500   false Chr5: 8786696-8787195
AT5G25320 1.0kb upstream 1.0kb upstream 3651   true Chr5: 8787196-8790846
AT5G25320 1.0kb upstream 1.0kb upstream 1000   false Chr5: 8789847-8790846
AT5G25320 1.0kb downstream 1.0kb downstream 3651   true Chr5: 8786196-8789846
AT5G25320 1.0kb downstream 1.0kb downstream 1000   false Chr5: 8786196-8787195
AT5G25320 3.0kb upstream 3.0kb upstream 5651   true Chr5: 8787196-8792846
AT5G25320 3.0kb upstream 3.0kb upstream 3000   false Chr5: 8789847-8792846
AT5G25320 3.0kb downstream 3.0kb downstream 5651   true Chr5: 8784196-8789846
AT5G25320 3.0kb downstream 3.0kb downstream 3000   false Chr5: 8784196-8787195

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0