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Gene : AT5G02530 A. thaliana

Gene ID  ? AT5G02530
Brief Description  RNA-binding (RRM/RBD/RNP motifs) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G59950.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G02530 0.5kb upstream 0.5kb upstream 2341   true Chr5: 564085-566425
AT5G02530 0.5kb upstream 0.5kb upstream 500   false Chr5: 565926-566425
AT5G02530 0.5kb downstream 0.5kb downstream 2341   true Chr5: 563585-565925
AT5G02530 0.5kb downstream 0.5kb downstream 500   false Chr5: 563585-564084
AT5G02530 1.0kb upstream 1.0kb upstream 2841   true Chr5: 564085-566925
AT5G02530 1.0kb upstream 1.0kb upstream 1000   false Chr5: 565926-566925
AT5G02530 1.0kb downstream 1.0kb downstream 2841   true Chr5: 563085-565925
AT5G02530 1.0kb downstream 1.0kb downstream 1000   false Chr5: 563085-564084
AT5G02530 3.0kb upstream 3.0kb upstream 4841   true Chr5: 564085-568925
AT5G02530 3.0kb upstream 3.0kb upstream 3000   false Chr5: 565926-568925
AT5G02530 3.0kb downstream 3.0kb downstream 4841   true Chr5: 561085-565925
AT5G02530 3.0kb downstream 3.0kb downstream 3000   false Chr5: 561085-564084

Proteins

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3 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway
03040 Spliceosome
03013 RNA transport

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139