Genomics
Sequence Feature Displayer
Gene Structure Displayer
J Browse Displayer
Overlapping Features Displayer
12 Flanking Regions
Flank size: from most upstream transcription start site, or most downstream transcription stop site
Region Name | Flank Size | Direction | Length | Gene Included? | Chromosome Location |
---|---|---|---|---|---|
AT5G02530 0.5kb upstream | 0.5kb | upstream |
2341
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true | Chr5: 564085-566425 |
AT5G02530 0.5kb upstream | 0.5kb | upstream |
500
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false | Chr5: 565926-566425 |
AT5G02530 0.5kb downstream | 0.5kb | downstream |
2341
![]() |
true | Chr5: 563585-565925 |
AT5G02530 0.5kb downstream | 0.5kb | downstream |
500
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false | Chr5: 563585-564084 |
AT5G02530 1.0kb upstream | 1.0kb | upstream |
2841
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true | Chr5: 564085-566925 |
AT5G02530 1.0kb upstream | 1.0kb | upstream |
1000
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false | Chr5: 565926-566925 |
AT5G02530 1.0kb downstream | 1.0kb | downstream |
2841
![]() |
true | Chr5: 563085-565925 |
AT5G02530 1.0kb downstream | 1.0kb | downstream |
1000
![]() |
false | Chr5: 563085-564084 |
AT5G02530 3.0kb upstream | 3.0kb | upstream |
4841
![]() |
true | Chr5: 564085-568925 |
AT5G02530 3.0kb upstream | 3.0kb | upstream |
3000
![]() |
false | Chr5: 565926-568925 |
AT5G02530 3.0kb downstream | 3.0kb | downstream |
4841
![]() |
true | Chr5: 561085-565925 |
AT5G02530 3.0kb downstream | 3.0kb | downstream |
3000
![]() |
false | Chr5: 561085-564084 |
Function
Gene Ontology Displayer
3 Pathways
Data Source: KEGG
Identifier | Name |
---|---|
03015 | mRNA surveillance pathway |
03040 | Spliceosome |
03013 | RNA transport |
Gene --> Ontology term
Gene --> Pathways
Expression
Plant Ontology Displayer
Bar Efp Browser Displayer
Array Expression
RNA-seq Expression
Co-expression
Save / Export
Other
11 Data Sets
Name | Description | Version |
---|---|---|
BAR Annotations Lookup | Mapping(s) between AGI locus and Affy Probeset identifier | 10/08/2013 |
Genome Annotation | Araport11 protein-coding, non-coding and transposable element genes | Araport11 (06/2016) |
RNA-seq expression | Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon | Araport11 (06/2016) |
PubMed to gene mapping | Curated associations between publications and NCBI Gene records | 8/12/2016 |
GO Annotation from TIGR | GO annotations assigned by TIGR Arabidopsis annotation effort | 8/01/2016 |
PO Annotation from TAIR | Literature-based annotations of genes to Plant Ontology (PO) terms | 06/30/2015 |
Swiss-Prot data set | High-quality, manually annotated, non-redundant protein sequence database | 2016_07 |
Panther data set | PANTHER paralogs from Arabidopsis | 11.0 |
KEGG pathways data set | Wiring diagrams of molecular interactions, reactions, and relations | 79.0 |
IntAct interactions data set | Curated binary and complex protein-protein interactions for Arabidopsis thaliana | 8/02/2016 |
BioGRID interaction data set | Curated set of genetic and physical interactions for Arabidopsis thaliana | 3.4.139 |