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Gene : AT2G38100 A. thaliana

Gene ID  ? AT2G38100
Brief Description  proton-dependent oligopeptide transport (POT) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: amino acid transmembrane transporter activity, uracil transmembrane transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.08 eight leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109); BEST Arabidopsis thaliana protein match is: peptide transporter 5 (TAIR:AT5G01180.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a nitrate transporter that is involved in nitrogen accumulation in embryos.  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • NPF5.5

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The localization of the mRNA coding for NPF5.5 demonstrates that it is the first NPF transporter reported to be expressed in Arabidopsis embryo.[AtNPF5.5] 25608465

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G38100 0.5kb upstream 0.5kb upstream 3077   true Chr2: 15948418-15951494
AT2G38100 0.5kb upstream 0.5kb upstream 500   false Chr2: 15950995-15951494
AT2G38100 0.5kb downstream 0.5kb downstream 3077   true Chr2: 15947918-15950994
AT2G38100 0.5kb downstream 0.5kb downstream 500   false Chr2: 15947918-15948417
AT2G38100 1.0kb upstream 1.0kb upstream 3577   true Chr2: 15948418-15951994
AT2G38100 1.0kb upstream 1.0kb upstream 1000   false Chr2: 15950995-15951994
AT2G38100 1.0kb downstream 1.0kb downstream 3577   true Chr2: 15947418-15950994
AT2G38100 1.0kb downstream 1.0kb downstream 1000   false Chr2: 15947418-15948417
AT2G38100 3.0kb upstream 3.0kb upstream 5577   true Chr2: 15948418-15953994
AT2G38100 3.0kb upstream 3.0kb upstream 3000   false Chr2: 15950995-15953994
AT2G38100 3.0kb downstream 3.0kb downstream 5577   true Chr2: 15945418-15950994
AT2G38100 3.0kb downstream 3.0kb downstream 3000   false Chr2: 15945418-15948417

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016