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Gene : AT5G39110 A. thaliana

Gene ID  ? AT5G39110
Brief Description  RmlC-like cupins superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G39150.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G39110 0.5kb upstream 0.5kb upstream 1436   true Chr5: 15657697-15659132
AT5G39110 0.5kb upstream 0.5kb upstream 500   false Chr5: 15658633-15659132
AT5G39110 0.5kb downstream 0.5kb downstream 1436   true Chr5: 15657197-15658632
AT5G39110 0.5kb downstream 0.5kb downstream 500   false Chr5: 15657197-15657696
AT5G39110 1.0kb upstream 1.0kb upstream 1936   true Chr5: 15657697-15659632
AT5G39110 1.0kb upstream 1.0kb upstream 1000   false Chr5: 15658633-15659632
AT5G39110 1.0kb downstream 1.0kb downstream 1936   true Chr5: 15656697-15658632
AT5G39110 1.0kb downstream 1.0kb downstream 1000   false Chr5: 15656697-15657696
AT5G39110 3.0kb upstream 3.0kb upstream 3936   true Chr5: 15657697-15661632
AT5G39110 3.0kb upstream 3.0kb upstream 3000   false Chr5: 15658633-15661632
AT5G39110 3.0kb downstream 3.0kb downstream 3936   true Chr5: 15654697-15658632
AT5G39110 3.0kb downstream 3.0kb downstream 3000   false Chr5: 15654697-15657696

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0