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Gene : ftsh7 A. thaliana

Gene ID  ? AT3G47060
Brief Description  FTSH protease 7  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? FTSH protease 7 (ftsh7); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 9 (TAIR:AT5G58870.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes an FtsH protease that is localized to the chloroplast  Source: TAIR, Jun 30, 2015.
Name  ? FTSH protease 7

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G47060 0.5kb upstream 0.5kb upstream 4541   true Chr3: 17332426-17336966
AT3G47060 0.5kb upstream 0.5kb upstream 500   false Chr3: 17332426-17332925
AT3G47060 0.5kb downstream 0.5kb downstream 4541   true Chr3: 17332926-17337466
AT3G47060 0.5kb downstream 0.5kb downstream 500   false Chr3: 17336967-17337466
AT3G47060 1.0kb upstream 1.0kb upstream 5041   true Chr3: 17331926-17336966
AT3G47060 1.0kb upstream 1.0kb upstream 1000   false Chr3: 17331926-17332925
AT3G47060 1.0kb downstream 1.0kb downstream 5041   true Chr3: 17332926-17337966
AT3G47060 1.0kb downstream 1.0kb downstream 1000   false Chr3: 17336967-17337966
AT3G47060 3.0kb upstream 3.0kb upstream 7041   true Chr3: 17329926-17336966
AT3G47060 3.0kb upstream 3.0kb upstream 3000   false Chr3: 17329926-17332925
AT3G47060 3.0kb downstream 3.0kb downstream 7041   true Chr3: 17332926-17339966
AT3G47060 3.0kb downstream 3.0kb downstream 3000   false Chr3: 17336967-17339966

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0