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Gene : UPL1 A. thaliana

Gene ID  ? AT1G55860
Brief Description  LOW protein: E3 ubiquitin ligase-like protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ubiquitin-protein ligase 1 (UPL1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosol, mitochondrion, ubiquitin ligase complex, membrane; EXPRESSED IN: guard cell, cultured cell, trichome, leaf; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), E3 ubiquitin ligase, domain of unknown function DUF913 (InterPro:IPR010314), HECT (InterPro:IPR000569), Ubiquitin interacting motif (InterPro:IPR003903), E3 ubiquitin ligase, domain of unknown function DUF908 (InterPro:IPR010309), Armadillo-type fold (InterPro:IPR016024), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 2 (TAIR:AT1G70320.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.  Source: TAIR, Jun 30, 2015.
Name  ? ubiquitin-protein ligase 1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G55860 0.5kb upstream 0.5kb upstream 13869   true Chr1: 20879900-20893768
AT1G55860 0.5kb upstream 0.5kb upstream 500   false Chr1: 20893269-20893768
AT1G55860 0.5kb downstream 0.5kb downstream 13869   true Chr1: 20879400-20893268
AT1G55860 0.5kb downstream 0.5kb downstream 500   false Chr1: 20879400-20879899
AT1G55860 1.0kb upstream 1.0kb upstream 14369   true Chr1: 20879900-20894268
AT1G55860 1.0kb upstream 1.0kb upstream 1000   false Chr1: 20893269-20894268
AT1G55860 1.0kb downstream 1.0kb downstream 14369   true Chr1: 20878900-20893268
AT1G55860 1.0kb downstream 1.0kb downstream 1000   false Chr1: 20878900-20879899
AT1G55860 3.0kb upstream 3.0kb upstream 16369   true Chr1: 20879900-20896268
AT1G55860 3.0kb upstream 3.0kb upstream 3000   false Chr1: 20893269-20896268
AT1G55860 3.0kb downstream 3.0kb downstream 16369   true Chr1: 20876900-20893268
AT1G55860 3.0kb downstream 3.0kb downstream 3000   false Chr1: 20876900-20879899

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1 Pathways

Data Source: KEGG

Identifier Name
04120 Ubiquitin mediated proteolysis

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139