help  | faq  | software  | ARAPORT

Gene : AT5G25300 A. thaliana

Gene ID  ? AT5G25300
Brief Description  F-box protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT5G25290.1).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G25300 0.5kb upstream 0.5kb upstream 3336   true Chr5: 8779758-8783093
AT5G25300 0.5kb upstream 0.5kb upstream 500   false Chr5: 8779758-8780257
AT5G25300 0.5kb downstream 0.5kb downstream 3336   true Chr5: 8780258-8783593
AT5G25300 0.5kb downstream 0.5kb downstream 500   false Chr5: 8783094-8783593
AT5G25300 1.0kb upstream 1.0kb upstream 3836   true Chr5: 8779258-8783093
AT5G25300 1.0kb upstream 1.0kb upstream 1000   false Chr5: 8779258-8780257
AT5G25300 1.0kb downstream 1.0kb downstream 3836   true Chr5: 8780258-8784093
AT5G25300 1.0kb downstream 1.0kb downstream 1000   false Chr5: 8783094-8784093
AT5G25300 3.0kb upstream 3.0kb upstream 5836   true Chr5: 8777258-8783093
AT5G25300 3.0kb upstream 3.0kb upstream 3000   false Chr5: 8777258-8780257
AT5G25300 3.0kb downstream 3.0kb downstream 5836   true Chr5: 8780258-8786093
AT5G25300 3.0kb downstream 3.0kb downstream 3000   false Chr5: 8783094-8786093

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0