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Gene : AT1G47470 A. thaliana

Gene ID  ? AT1G47470
Brief Description  ECA1 gametogenesis family protein (DUF784)  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, synergid; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: downregulated in DIF1 18 (TAIR:AT1G45190.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G47470 0.5kb upstream 0.5kb upstream 1104   true Chr1: 17414547-17415650
AT1G47470 0.5kb upstream 0.5kb upstream 500   false Chr1: 17415151-17415650
AT1G47470 0.5kb downstream 0.5kb downstream 1104   true Chr1: 17414047-17415150
AT1G47470 0.5kb downstream 0.5kb downstream 500   false Chr1: 17414047-17414546
AT1G47470 1.0kb upstream 1.0kb upstream 1604   true Chr1: 17414547-17416150
AT1G47470 1.0kb upstream 1.0kb upstream 1000   false Chr1: 17415151-17416150
AT1G47470 1.0kb downstream 1.0kb downstream 1604   true Chr1: 17413547-17415150
AT1G47470 1.0kb downstream 1.0kb downstream 1000   false Chr1: 17413547-17414546
AT1G47470 3.0kb upstream 3.0kb upstream 3604   true Chr1: 17414547-17418150
AT1G47470 3.0kb upstream 3.0kb upstream 3000   false Chr1: 17415151-17418150
AT1G47470 3.0kb downstream 3.0kb downstream 3604   true Chr1: 17411547-17415150
AT1G47470 3.0kb downstream 3.0kb downstream 3000   false Chr1: 17411547-17414546

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0