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Gene : AT5G09940 A. thaliana

Gene ID  ? AT5G09940
Brief Description  hypothetical protein (DUF1635)  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Protein of unknown function (DUF1635); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1635 (InterPro:IPR012862); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1635) (TAIR:AT2G28690.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G09940 0.5kb upstream 0.5kb upstream 1142   true Chr5: 3100692-3101833
AT5G09940 0.5kb upstream 0.5kb upstream 500   false Chr5: 3100692-3101191
AT5G09940 0.5kb downstream 0.5kb downstream 1142   true Chr5: 3101192-3102333
AT5G09940 0.5kb downstream 0.5kb downstream 500   false Chr5: 3101834-3102333
AT5G09940 1.0kb upstream 1.0kb upstream 1642   true Chr5: 3100192-3101833
AT5G09940 1.0kb upstream 1.0kb upstream 1000   false Chr5: 3100192-3101191
AT5G09940 1.0kb downstream 1.0kb downstream 1642   true Chr5: 3101192-3102833
AT5G09940 1.0kb downstream 1.0kb downstream 1000   false Chr5: 3101834-3102833
AT5G09940 3.0kb upstream 3.0kb upstream 3642   true Chr5: 3098192-3101833
AT5G09940 3.0kb upstream 3.0kb upstream 3000   false Chr5: 3098192-3101191
AT5G09940 3.0kb downstream 3.0kb downstream 3642   true Chr5: 3101192-3104833
AT5G09940 3.0kb downstream 3.0kb downstream 3000   false Chr5: 3101834-3104833

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0