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Gene : MYB97 A. thaliana

Gene ID  ? AT4G26930
Brief Description  myb domain protein 97  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? myb domain protein 97 (MYB97); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 120 (TAIR:AT5G55020.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a putative transcription factor (MYB97).  Source: TAIR, Jun 30, 2015.
Name  ? myb domain protein 97
  • synonyms:
  • AtMYB97,
  • myb domain protein 97

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
All these results indicate that MYB97, MYB101 and MYB120 participate in pollen tube reception, possibly by controlling the expression of downstream genes. 24278028

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G26930 0.5kb upstream 0.5kb upstream 2352   true Chr4: 13527078-13529429
AT4G26930 0.5kb upstream 0.5kb upstream 500   false Chr4: 13527078-13527577
AT4G26930 0.5kb downstream 0.5kb downstream 2352   true Chr4: 13527578-13529929
AT4G26930 0.5kb downstream 0.5kb downstream 500   false Chr4: 13529430-13529929
AT4G26930 1.0kb upstream 1.0kb upstream 2852   true Chr4: 13526578-13529429
AT4G26930 1.0kb upstream 1.0kb upstream 1000   false Chr4: 13526578-13527577
AT4G26930 1.0kb downstream 1.0kb downstream 2852   true Chr4: 13527578-13530429
AT4G26930 1.0kb downstream 1.0kb downstream 1000   false Chr4: 13529430-13530429
AT4G26930 3.0kb upstream 3.0kb upstream 4852   true Chr4: 13524578-13529429
AT4G26930 3.0kb upstream 3.0kb upstream 3000   false Chr4: 13524578-13527577
AT4G26930 3.0kb downstream 3.0kb downstream 4852   true Chr4: 13527578-13532429
AT4G26930 3.0kb downstream 3.0kb downstream 3000   false Chr4: 13529430-13532429

Proteins

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Function

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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Homology

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139