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Gene : AT5G02580 A. thaliana

Gene ID  ? AT5G02580
Brief Description  argininosuccinate lyase  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G55240.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G02580 0.5kb upstream 0.5kb upstream 1549   true Chr5: 579244-580792
AT5G02580 0.5kb upstream 0.5kb upstream 500   false Chr5: 579244-579743
AT5G02580 0.5kb downstream 0.5kb downstream 1549   true Chr5: 579744-581292
AT5G02580 0.5kb downstream 0.5kb downstream 500   false Chr5: 580793-581292
AT5G02580 1.0kb upstream 1.0kb upstream 2049   true Chr5: 578744-580792
AT5G02580 1.0kb upstream 1.0kb upstream 1000   false Chr5: 578744-579743
AT5G02580 1.0kb downstream 1.0kb downstream 2049   true Chr5: 579744-581792
AT5G02580 1.0kb downstream 1.0kb downstream 1000   false Chr5: 580793-581792
AT5G02580 3.0kb upstream 3.0kb upstream 4049   true Chr5: 576744-580792
AT5G02580 3.0kb upstream 3.0kb upstream 3000   false Chr5: 576744-579743
AT5G02580 3.0kb downstream 3.0kb downstream 4049   true Chr5: 579744-583792
AT5G02580 3.0kb downstream 3.0kb downstream 3000   false Chr5: 580793-583792

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0