help  | faq  | software  | ARAPORT

Gene : CID5 A. thaliana

Gene ID  ? AT5G11440
Brief Description  CTC-interacting domain 5  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CTC-interacting domain 5 (CID5); CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 6 (TAIR:AT5G25540.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Interacts with PAB (poly A binding protein) in yeast two hybrid experiments. Contains PAM2 motif, a PABC interacting domain.  Source: TAIR, Jun 30, 2015.
Name  ? CTC-interacting domain 5
  • synonyms:
  • IPD1,

Locus History Displayer

Publication Counts Displayer

1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
IPD1 regulates the endocycle leading to hypocotyl elongation and this function is controlled by blue and far-red light.[IPD1] 16897495


Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G11440 0.5kb upstream 0.5kb upstream 1989   true Chr5: 3652714-3654702
AT5G11440 0.5kb upstream 0.5kb upstream 500   false Chr5: 3654203-3654702
AT5G11440 0.5kb downstream 0.5kb downstream 1989   true Chr5: 3652214-3654202
AT5G11440 0.5kb downstream 0.5kb downstream 500   false Chr5: 3652214-3652713
AT5G11440 1.0kb upstream 1.0kb upstream 2489   true Chr5: 3652714-3655202
AT5G11440 1.0kb upstream 1.0kb upstream 1000   false Chr5: 3654203-3655202
AT5G11440 1.0kb downstream 1.0kb downstream 2489   true Chr5: 3651714-3654202
AT5G11440 1.0kb downstream 1.0kb downstream 1000   false Chr5: 3651714-3652713
AT5G11440 3.0kb upstream 3.0kb upstream 4489   true Chr5: 3652714-3657202
AT5G11440 3.0kb upstream 3.0kb upstream 3000   false Chr5: 3654203-3657202
AT5G11440 3.0kb downstream 3.0kb downstream 4489   true Chr5: 3649714-3654202
AT5G11440 3.0kb downstream 3.0kb downstream 3000   false Chr5: 3649714-3652713


Protein Displayer


Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression


Save / Export






Cytoscape Network Displayer


Homologue Displayer

Phytomine Ortholog Displayer


Alelle Table Displayer

Stock Gene Table Displayer



10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139