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Gene : CID5 A. thaliana

Gene ID  ? AT5G11440
Brief Description  CTC-interacting domain 5  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CTC-interacting domain 5 (CID5); CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 6 (TAIR:AT5G25540.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Interacts with PAB (poly A binding protein) in yeast two hybrid experiments. Contains PAM2 motif, a PABC interacting domain.  Source: TAIR, Jun 30, 2015.
Name  ? CTC-interacting domain 5
  • synonyms:
  • INCREASED POLYPLOIDY LEVEL IN DARKNESS 1,
  • IPD1

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
IPD1 regulates the endocycle leading to hypocotyl elongation and this function is controlled by blue and far-red light.[IPD1] 16897495

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G11440 0.5kb upstream 0.5kb upstream 1989   true Chr5: 3652714-3654702
AT5G11440 0.5kb upstream 0.5kb upstream 500   false Chr5: 3654203-3654702
AT5G11440 0.5kb downstream 0.5kb downstream 1989   true Chr5: 3652214-3654202
AT5G11440 0.5kb downstream 0.5kb downstream 500   false Chr5: 3652214-3652713
AT5G11440 1.0kb upstream 1.0kb upstream 2489   true Chr5: 3652714-3655202
AT5G11440 1.0kb upstream 1.0kb upstream 1000   false Chr5: 3654203-3655202
AT5G11440 1.0kb downstream 1.0kb downstream 2489   true Chr5: 3651714-3654202
AT5G11440 1.0kb downstream 1.0kb downstream 1000   false Chr5: 3651714-3652713
AT5G11440 3.0kb upstream 3.0kb upstream 4489   true Chr5: 3652714-3657202
AT5G11440 3.0kb upstream 3.0kb upstream 3000   false Chr5: 3654203-3657202
AT5G11440 3.0kb downstream 3.0kb downstream 4489   true Chr5: 3649714-3654202
AT5G11440 3.0kb downstream 3.0kb downstream 3000   false Chr5: 3649714-3652713

Proteins

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0 Pathways

Data Source: KEGG

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Interactions

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139