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Gene : KINESIN-13A A. thaliana

Gene ID  ? AT3G16630
Brief Description  P-loop containing nucleoside triphosphate hydrolases superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? KINESIN-13A; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: trichome morphogenesis; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT3G16060.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Kinesin-13A localized to entire Golgi stacks. Involved in trichome development.  Source: TAIR, Jun 30, 2015.

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3 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtKinesin-13A decorates Golgi-associated vesicles and may be involved in regulating the formation of Golgi vesicles in the root-cap peripheral cells. 19939242
We show that RIP3 is localized at microtubules and interacts with the kinesin-13 family member AtKinesin-13A, suggesting a role for RIP3 in microtubule reorganization and a possible function in ROP-regulated polar growth. 20832900
Kinesin-13A plays a central role in microtubule disassembly via the active ROP-MIDD1 cascade, which establishes the secondary cell wall pattern in metaxylem vessel cells. 24280391

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G16630 0.5kb upstream 0.5kb upstream 6077   true Chr3: 5662375-5668451
AT3G16630 0.5kb upstream 0.5kb upstream 500   false Chr3: 5667952-5668451
AT3G16630 0.5kb downstream 0.5kb downstream 6077   true Chr3: 5661875-5667951
AT3G16630 0.5kb downstream 0.5kb downstream 500   false Chr3: 5661875-5662374
AT3G16630 1.0kb upstream 1.0kb upstream 6577   true Chr3: 5662375-5668951
AT3G16630 1.0kb upstream 1.0kb upstream 1000   false Chr3: 5667952-5668951
AT3G16630 1.0kb downstream 1.0kb downstream 6577   true Chr3: 5661375-5667951
AT3G16630 1.0kb downstream 1.0kb downstream 1000   false Chr3: 5661375-5662374
AT3G16630 3.0kb upstream 3.0kb upstream 8577   true Chr3: 5662375-5670951
AT3G16630 3.0kb upstream 3.0kb upstream 3000   false Chr3: 5667952-5670951
AT3G16630 3.0kb downstream 3.0kb downstream 8577   true Chr3: 5659375-5667951
AT3G16630 3.0kb downstream 3.0kb downstream 3000   false Chr3: 5659375-5662374

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139