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Gene : AAS A. thaliana

Gene ID  ? AT2G20340
Brief Description  Pyridoxal phosphate (PLP)-dependent transferases superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity; INVOLVED IN: response to wounding, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: L-tyrosine decarboxylase (TAIR:AT4G28680.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes an aromatic aldehyde synthase (AtAAS), which catalyzes the in vitro conversion of phenylalanine and 3,4-dihydroxy-L-phenylalanine to phenylacetaldehyde and dopaldehyde, respectively.  Source: TAIR, Jun 30, 2015.
Name  ? aromatic aldehyde synthase
  • synonyms:
  • AtAAS

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
At2g20340 gene product is an aromatic aldehyde synthase, which catalyzes the conversion of phenylalanine and 3,4-dihydroxy-l-phenylalanine to phenylacetaldehyde and dopaldehyde, respectively. 21284755

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G20340 0.5kb upstream 0.5kb upstream 3623   true Chr2: 8779167-8782789
AT2G20340 0.5kb upstream 0.5kb upstream 500   false Chr2: 8779167-8779666
AT2G20340 0.5kb downstream 0.5kb downstream 3623   true Chr2: 8779667-8783289
AT2G20340 0.5kb downstream 0.5kb downstream 500   false Chr2: 8782790-8783289
AT2G20340 1.0kb upstream 1.0kb upstream 4123   true Chr2: 8778667-8782789
AT2G20340 1.0kb upstream 1.0kb upstream 1000   false Chr2: 8778667-8779666
AT2G20340 1.0kb downstream 1.0kb downstream 4123   true Chr2: 8779667-8783789
AT2G20340 1.0kb downstream 1.0kb downstream 1000   false Chr2: 8782790-8783789
AT2G20340 3.0kb upstream 3.0kb upstream 6123   true Chr2: 8776667-8782789
AT2G20340 3.0kb upstream 3.0kb upstream 3000   false Chr2: 8776667-8779666
AT2G20340 3.0kb downstream 3.0kb downstream 6123   true Chr2: 8779667-8785789
AT2G20340 3.0kb downstream 3.0kb downstream 3000   false Chr2: 8782790-8785789

Proteins

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Function

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00350 Tyrosine metabolism
00950 Isoquinoline alkaloid biosynthesis

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Expression

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Interactions

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Homology

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016