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Gene : AT4G26940 A. thaliana

Gene ID  ? AT4G26940
Brief Description  Galactosyltransferase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT1G05170.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G26940 0.5kb upstream 0.5kb upstream 3996   true Chr4: 13529260-13533255
AT4G26940 0.5kb upstream 0.5kb upstream 500   false Chr4: 13532756-13533255
AT4G26940 0.5kb downstream 0.5kb downstream 3996   true Chr4: 13528760-13532755
AT4G26940 0.5kb downstream 0.5kb downstream 500   false Chr4: 13528760-13529259
AT4G26940 1.0kb upstream 1.0kb upstream 4496   true Chr4: 13529260-13533755
AT4G26940 1.0kb upstream 1.0kb upstream 1000   false Chr4: 13532756-13533755
AT4G26940 1.0kb downstream 1.0kb downstream 4496   true Chr4: 13528260-13532755
AT4G26940 1.0kb downstream 1.0kb downstream 1000   false Chr4: 13528260-13529259
AT4G26940 3.0kb upstream 3.0kb upstream 6496   true Chr4: 13529260-13535755
AT4G26940 3.0kb upstream 3.0kb upstream 3000   false Chr4: 13532756-13535755
AT4G26940 3.0kb downstream 3.0kb downstream 6496   true Chr4: 13526260-13532755
AT4G26940 3.0kb downstream 3.0kb downstream 3000   false Chr4: 13526260-13529259

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0 Pathways

Data Source: KEGG

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139