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Gene : PPD5 A. thaliana

Gene ID  ? AT5G11450
Brief Description  PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123).  Source: TAIR, Jun 30, 2015.
Name  ? PsbP domain protein 5

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The developmental defects observed in the ppd5 mutants are related to a deficiency in strigolactone biosynthesis.[PPD5] 22174848

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G11450 0.5kb upstream 0.5kb upstream 2756   true Chr5: 3653892-3656647
AT5G11450 0.5kb upstream 0.5kb upstream 500   false Chr5: 3653892-3654391
AT5G11450 0.5kb downstream 0.5kb downstream 2756   true Chr5: 3654392-3657147
AT5G11450 0.5kb downstream 0.5kb downstream 500   false Chr5: 3656648-3657147
AT5G11450 1.0kb upstream 1.0kb upstream 3256   true Chr5: 3653392-3656647
AT5G11450 1.0kb upstream 1.0kb upstream 1000   false Chr5: 3653392-3654391
AT5G11450 1.0kb downstream 1.0kb downstream 3256   true Chr5: 3654392-3657647
AT5G11450 1.0kb downstream 1.0kb downstream 1000   false Chr5: 3656648-3657647
AT5G11450 3.0kb upstream 3.0kb upstream 5256   true Chr5: 3651392-3656647
AT5G11450 3.0kb upstream 3.0kb upstream 3000   false Chr5: 3651392-3654391
AT5G11450 3.0kb downstream 3.0kb downstream 5256   true Chr5: 3654392-3659647
AT5G11450 3.0kb downstream 3.0kb downstream 3000   false Chr5: 3656648-3659647

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139