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Gene : AT2G20330 A. thaliana

Gene ID  ? AT2G20330
Brief Description  Transducin/WD40 repeat-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G20330 0.5kb upstream 0.5kb upstream 3516   true Chr2: 8772653-8776168
AT2G20330 0.5kb upstream 0.5kb upstream 500   false Chr2: 8775669-8776168
AT2G20330 0.5kb downstream 0.5kb downstream 3516   true Chr2: 8772153-8775668
AT2G20330 0.5kb downstream 0.5kb downstream 500   false Chr2: 8772153-8772652
AT2G20330 1.0kb upstream 1.0kb upstream 4016   true Chr2: 8772653-8776668
AT2G20330 1.0kb upstream 1.0kb upstream 1000   false Chr2: 8775669-8776668
AT2G20330 1.0kb downstream 1.0kb downstream 4016   true Chr2: 8771653-8775668
AT2G20330 1.0kb downstream 1.0kb downstream 1000   false Chr2: 8771653-8772652
AT2G20330 3.0kb upstream 3.0kb upstream 6016   true Chr2: 8772653-8778668
AT2G20330 3.0kb upstream 3.0kb upstream 3000   false Chr2: 8775669-8778668
AT2G20330 3.0kb downstream 3.0kb downstream 6016   true Chr2: 8769653-8775668
AT2G20330 3.0kb downstream 3.0kb downstream 3000   false Chr2: 8769653-8772652

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0