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Gene : AT4G08878 A. thaliana
Gene ID  ? AT4G08878
Brief Description  Major facilitator superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Major facilitator superfamily protein; FUNCTIONS IN: transporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: transport, phosphate transport, transmembrane transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter 1;6 (TAIR:AT5G43340.1).  Source: TAIR, Jun 30, 2015.
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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G08878 0.5kb upstream 0.5kb upstream 1343   true Chr4: 5682680-5684022
AT4G08878 0.5kb upstream 0.5kb upstream 500   false Chr4: 5682680-5683179
AT4G08878 0.5kb downstream 0.5kb downstream 1343   true Chr4: 5683180-5684522
AT4G08878 0.5kb downstream 0.5kb downstream 500   false Chr4: 5684023-5684522
AT4G08878 1.0kb upstream 1.0kb upstream 1843   true Chr4: 5682180-5684022
AT4G08878 1.0kb upstream 1.0kb upstream 1000   false Chr4: 5682180-5683179
AT4G08878 1.0kb downstream 1.0kb downstream 1843   true Chr4: 5683180-5685022
AT4G08878 1.0kb downstream 1.0kb downstream 1000   false Chr4: 5684023-5685022
AT4G08878 3.0kb upstream 3.0kb upstream 3843   true Chr4: 5680180-5684022
AT4G08878 3.0kb upstream 3.0kb upstream 3000   false Chr4: 5680180-5683179
AT4G08878 3.0kb downstream 3.0kb downstream 3843   true Chr4: 5683180-5687022
AT4G08878 3.0kb downstream 3.0kb downstream 3000   false Chr4: 5684023-5687022

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
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