Genomics
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12 Flanking Regions
Flank size: from most upstream transcription start site, or most downstream transcription stop site
Region Name | Flank Size | Direction | Length | Gene Included? | Chromosome Location |
---|---|---|---|---|---|
AT4G08878 0.5kb upstream | 0.5kb | upstream |
1343
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true | Chr4: 5682680-5684022 |
AT4G08878 0.5kb upstream | 0.5kb | upstream |
500
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false | Chr4: 5682680-5683179 |
AT4G08878 0.5kb downstream | 0.5kb | downstream |
1343
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true | Chr4: 5683180-5684522 |
AT4G08878 0.5kb downstream | 0.5kb | downstream |
500
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false | Chr4: 5684023-5684522 |
AT4G08878 1.0kb upstream | 1.0kb | upstream |
1843
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true | Chr4: 5682180-5684022 |
AT4G08878 1.0kb upstream | 1.0kb | upstream |
1000
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false | Chr4: 5682180-5683179 |
AT4G08878 1.0kb downstream | 1.0kb | downstream |
1843
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true | Chr4: 5683180-5685022 |
AT4G08878 1.0kb downstream | 1.0kb | downstream |
1000
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false | Chr4: 5684023-5685022 |
AT4G08878 3.0kb upstream | 3.0kb | upstream |
3843
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true | Chr4: 5680180-5684022 |
AT4G08878 3.0kb upstream | 3.0kb | upstream |
3000
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false | Chr4: 5680180-5683179 |
AT4G08878 3.0kb downstream | 3.0kb | downstream |
3843
![]() |
true | Chr4: 5683180-5687022 |
AT4G08878 3.0kb downstream | 3.0kb | downstream |
3000
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false | Chr4: 5684023-5687022 |
Expression
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7 Data Sets
Name | Description | Version |
---|---|---|
BAR Annotations Lookup | Mapping(s) between AGI locus and Affy Probeset identifier | 10/08/2013 |
Genome Annotation | Araport11 protein-coding, non-coding and transposable element genes | Araport11 (06/2016) |
RNA-seq expression | Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon | Araport11 (06/2016) |
PubMed to gene mapping | Curated associations between publications and NCBI Gene records | 8/12/2016 |
GO Annotation from TIGR | GO annotations assigned by TIGR Arabidopsis annotation effort | 8/01/2016 |
TrEMBL data set | Computationally analysed records, enriched with automatic annotation | 2016_07 |
Panther data set | PANTHER paralogs from Arabidopsis | 11.0 |