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Gene : AT1G53210 A. thaliana

Gene ID  ? AT1G53210
Brief Description  sodium/calcium exchanger family protein / calcium-binding EF hand family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? sodium/calcium exchanger family protein / calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: transmembrane transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Sodium/calcium exchanger membrane region (InterPro:IPR004837), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G29020.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a Na /Ca 2 exchanger-like protein that participates in the maintenance of Ca 2 homeostasis.  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • NCL,
  • AtNCL,
  • Na /Ca2 exchanger

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtNCL (At1g53210)participates in the maintenance of Ca(2+) homeostasis. 23148213

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G53210 0.5kb upstream 0.5kb upstream 3907   true Chr1: 19843950-19847856
AT1G53210 0.5kb upstream 0.5kb upstream 500   false Chr1: 19843950-19844449
AT1G53210 0.5kb downstream 0.5kb downstream 3907   true Chr1: 19844450-19848356
AT1G53210 0.5kb downstream 0.5kb downstream 500   false Chr1: 19847857-19848356
AT1G53210 1.0kb upstream 1.0kb upstream 4407   true Chr1: 19843450-19847856
AT1G53210 1.0kb upstream 1.0kb upstream 1000   false Chr1: 19843450-19844449
AT1G53210 1.0kb downstream 1.0kb downstream 4407   true Chr1: 19844450-19848856
AT1G53210 1.0kb downstream 1.0kb downstream 1000   false Chr1: 19847857-19848856
AT1G53210 3.0kb upstream 3.0kb upstream 6407   true Chr1: 19841450-19847856
AT1G53210 3.0kb upstream 3.0kb upstream 3000   false Chr1: 19841450-19844449
AT1G53210 3.0kb downstream 3.0kb downstream 6407   true Chr1: 19844450-19850856
AT1G53210 3.0kb downstream 3.0kb downstream 3000   false Chr1: 19847857-19850856

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016