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Gene : GER2 A. thaliana

Gene ID  ? AT5G39190
Brief Description  germin-like protein 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? germin-like protein 2 (GER2); CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G39160.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? germin-like protein (GLP2a)  Source: TAIR, Jun 30, 2015.
Name  ? germin-like protein 2
  • synonyms:
  • GLP2A,
  • GERMIN-LIKE PROTEIN 2A,
  • ATGER2,
  • A. THALIANA GERMIN LIKE PROTEIN 2

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G39190 0.5kb upstream 0.5kb upstream 1694   true Chr5: 15692542-15694235
AT5G39190 0.5kb upstream 0.5kb upstream 500   false Chr5: 15693736-15694235
AT5G39190 0.5kb downstream 0.5kb downstream 1694   true Chr5: 15692042-15693735
AT5G39190 0.5kb downstream 0.5kb downstream 500   false Chr5: 15692042-15692541
AT5G39190 1.0kb upstream 1.0kb upstream 2194   true Chr5: 15692542-15694735
AT5G39190 1.0kb upstream 1.0kb upstream 1000   false Chr5: 15693736-15694735
AT5G39190 1.0kb downstream 1.0kb downstream 2194   true Chr5: 15691542-15693735
AT5G39190 1.0kb downstream 1.0kb downstream 1000   false Chr5: 15691542-15692541
AT5G39190 3.0kb upstream 3.0kb upstream 4194   true Chr5: 15692542-15696735
AT5G39190 3.0kb upstream 3.0kb upstream 3000   false Chr5: 15693736-15696735
AT5G39190 3.0kb downstream 3.0kb downstream 4194   true Chr5: 15689542-15693735
AT5G39190 3.0kb downstream 3.0kb downstream 3000   false Chr5: 15689542-15692541

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Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139