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Gene : AT5G41670 A. thaliana

Gene ID  ? AT5G41670
Brief Description  6-phosphogluconate dehydrogenase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? 6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding domain (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT1G64190.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G41670 0.5kb upstream 0.5kb upstream 3217   true Chr5: 16664674-16667890
AT5G41670 0.5kb upstream 0.5kb upstream 500   false Chr5: 16667391-16667890
AT5G41670 0.5kb downstream 0.5kb downstream 3217   true Chr5: 16664174-16667390
AT5G41670 0.5kb downstream 0.5kb downstream 500   false Chr5: 16664174-16664673
AT5G41670 1.0kb upstream 1.0kb upstream 3717   true Chr5: 16664674-16668390
AT5G41670 1.0kb upstream 1.0kb upstream 1000   false Chr5: 16667391-16668390
AT5G41670 1.0kb downstream 1.0kb downstream 3717   true Chr5: 16663674-16667390
AT5G41670 1.0kb downstream 1.0kb downstream 1000   false Chr5: 16663674-16664673
AT5G41670 3.0kb upstream 3.0kb upstream 5717   true Chr5: 16664674-16670390
AT5G41670 3.0kb upstream 3.0kb upstream 3000   false Chr5: 16667391-16670390
AT5G41670 3.0kb downstream 3.0kb downstream 5717   true Chr5: 16661674-16667390
AT5G41670 3.0kb downstream 3.0kb downstream 3000   false Chr5: 16661674-16664673

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5 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
01200 Carbon metabolism
00480 Glutathione metabolism
00030 Pentose phosphate pathway

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139