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Gene : AT4G08850 A. thaliana

Gene ID  ? AT4G08850
Brief Description  Leucine-rich repeat receptor-like protein kinase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase family protein with leucine-rich repeat domain (TAIR:AT1G35710.1).  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
MDIS1-MIK is a cell-surface receptor heteromer on the pollen tube that perceives female attractant LURE1 in A. thaliana. LURE1 specifically binds the extracellular domains of MDIS1, MIK1 and MIK2, whereas mdis1 and mik1 mik2 mutant pollen tubes respond less sensitively to LURE1. [MIK2] 26863186

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G08850 0.5kb upstream 0.5kb upstream 4974   true Chr4: 5636479-5641452
AT4G08850 0.5kb upstream 0.5kb upstream 500   false Chr4: 5640953-5641452
AT4G08850 0.5kb downstream 0.5kb downstream 4974   true Chr4: 5635979-5640952
AT4G08850 0.5kb downstream 0.5kb downstream 500   false Chr4: 5635979-5636478
AT4G08850 1.0kb upstream 1.0kb upstream 5474   true Chr4: 5636479-5641952
AT4G08850 1.0kb upstream 1.0kb upstream 1000   false Chr4: 5640953-5641952
AT4G08850 1.0kb downstream 1.0kb downstream 5474   true Chr4: 5635479-5640952
AT4G08850 1.0kb downstream 1.0kb downstream 1000   false Chr4: 5635479-5636478
AT4G08850 3.0kb upstream 3.0kb upstream 7474   true Chr4: 5636479-5643952
AT4G08850 3.0kb upstream 3.0kb upstream 3000   false Chr4: 5640953-5643952
AT4G08850 3.0kb downstream 3.0kb downstream 7474   true Chr4: 5633479-5640952
AT4G08850 3.0kb downstream 3.0kb downstream 3000   false Chr4: 5633479-5636478

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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Homology

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139