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Gene : AT-HF A. thaliana

Gene ID  ? AT4G26900
Brief Description  HIS HF  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? HIS HF (AT-HF); FUNCTIONS IN: imidazoleglycerol-phosphate synthase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Imidazole glycerol phosphate synthase, subunit H (InterPro:IPR010139), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Ribulose-phosphate binding barrel (InterPro:IPR011060), Histidine biosynthesis, HisF (InterPro:IPR004651), Glutamine amidotransferase type 1 (InterPro:IPR017926), Histidine biosynthesis (InterPro:IPR006062), Imidazole glycerol phosphate synthase HisHF (InterPro:IPR014640).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a glutamine amidotransferase and cyclase, catalyzes the fifth and sixth steps of the histidine biosynthetic pathway  Source: TAIR, Jun 30, 2015.
Name  ? HIS HF
  • synonyms:
  • HISN4

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G26900 0.5kb upstream 0.5kb upstream 4936   true Chr4: 13514932-13519867
AT4G26900 0.5kb upstream 0.5kb upstream 500   false Chr4: 13514932-13515431
AT4G26900 0.5kb downstream 0.5kb downstream 4936   true Chr4: 13515432-13520367
AT4G26900 0.5kb downstream 0.5kb downstream 500   false Chr4: 13519868-13520367
AT4G26900 1.0kb upstream 1.0kb upstream 5436   true Chr4: 13514432-13519867
AT4G26900 1.0kb upstream 1.0kb upstream 1000   false Chr4: 13514432-13515431
AT4G26900 1.0kb downstream 1.0kb downstream 5436   true Chr4: 13515432-13520867
AT4G26900 1.0kb downstream 1.0kb downstream 1000   false Chr4: 13519868-13520867
AT4G26900 3.0kb upstream 3.0kb upstream 7436   true Chr4: 13512432-13519867
AT4G26900 3.0kb upstream 3.0kb upstream 3000   false Chr4: 13512432-13515431
AT4G26900 3.0kb downstream 3.0kb downstream 7436   true Chr4: 13515432-13522867
AT4G26900 3.0kb downstream 3.0kb downstream 3000   false Chr4: 13519868-13522867

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
01230 Biosynthesis of amino acids
00340 Histidine metabolism

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0