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Gene : AT5G11490 A. thaliana

Gene ID  ? AT5G11490
Brief Description  adaptin family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? adaptin family protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G11490 0.5kb upstream 0.5kb upstream 5254   true Chr5: 3671199-3676452
AT5G11490 0.5kb upstream 0.5kb upstream 500   false Chr5: 3671199-3671698
AT5G11490 0.5kb downstream 0.5kb downstream 5254   true Chr5: 3671699-3676952
AT5G11490 0.5kb downstream 0.5kb downstream 500   false Chr5: 3676453-3676952
AT5G11490 1.0kb upstream 1.0kb upstream 5754   true Chr5: 3670699-3676452
AT5G11490 1.0kb upstream 1.0kb upstream 1000   false Chr5: 3670699-3671698
AT5G11490 1.0kb downstream 1.0kb downstream 5754   true Chr5: 3671699-3677452
AT5G11490 1.0kb downstream 1.0kb downstream 1000   false Chr5: 3676453-3677452
AT5G11490 3.0kb upstream 3.0kb upstream 7754   true Chr5: 3668699-3676452
AT5G11490 3.0kb upstream 3.0kb upstream 3000   false Chr5: 3668699-3671698
AT5G11490 3.0kb downstream 3.0kb downstream 7754   true Chr5: 3671699-3679452
AT5G11490 3.0kb downstream 3.0kb downstream 3000   false Chr5: 3676453-3679452


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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139