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Gene : AT3G16600 A. thaliana

Gene ID  ? AT3G16600
Brief Description  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G50410.1).  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • SNF2-RING-HELICASE?LIKE 3,
  • FRG3

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G16600 0.5kb upstream 0.5kb upstream 3332   true Chr3: 5652839-5656170
AT3G16600 0.5kb upstream 0.5kb upstream 500   false Chr3: 5655671-5656170
AT3G16600 0.5kb downstream 0.5kb downstream 3332   true Chr3: 5652339-5655670
AT3G16600 0.5kb downstream 0.5kb downstream 500   false Chr3: 5652339-5652838
AT3G16600 1.0kb upstream 1.0kb upstream 3832   true Chr3: 5652839-5656670
AT3G16600 1.0kb upstream 1.0kb upstream 1000   false Chr3: 5655671-5656670
AT3G16600 1.0kb downstream 1.0kb downstream 3832   true Chr3: 5651839-5655670
AT3G16600 1.0kb downstream 1.0kb downstream 1000   false Chr3: 5651839-5652838
AT3G16600 3.0kb upstream 3.0kb upstream 5832   true Chr3: 5652839-5658670
AT3G16600 3.0kb upstream 3.0kb upstream 3000   false Chr3: 5655671-5658670
AT3G16600 3.0kb downstream 3.0kb downstream 5832   true Chr3: 5649839-5655670
AT3G16600 3.0kb downstream 3.0kb downstream 3000   false Chr3: 5649839-5652838

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0