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Gene : eIF6A A. thaliana

Gene ID  ? AT3G55620
Brief Description  Translation initiation factor IF6  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? embryo defective 1624 (emb1624); FUNCTIONS IN: ribosome binding, translation initiation factor activity; INVOLVED IN: translational initiation, embryo development ending in seed dormancy; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF6 (InterPro:IPR002769); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF6 (TAIR:AT2G39820.1).  Source: TAIR, Jun 30, 2015.
Name  ? eukaryotic initiation facor 6A
  • synonyms:
  • embryo defective 1624,
  • emb1624

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G55620 0.5kb upstream 0.5kb upstream 2999   true Chr3: 20633557-20636555
AT3G55620 0.5kb upstream 0.5kb upstream 500   false Chr3: 20633557-20634056
AT3G55620 0.5kb downstream 0.5kb downstream 2999   true Chr3: 20634057-20637055
AT3G55620 0.5kb downstream 0.5kb downstream 500   false Chr3: 20636556-20637055
AT3G55620 1.0kb upstream 1.0kb upstream 3499   true Chr3: 20633057-20636555
AT3G55620 1.0kb upstream 1.0kb upstream 1000   false Chr3: 20633057-20634056
AT3G55620 1.0kb downstream 1.0kb downstream 3499   true Chr3: 20634057-20637555
AT3G55620 1.0kb downstream 1.0kb downstream 1000   false Chr3: 20636556-20637555
AT3G55620 3.0kb upstream 3.0kb upstream 5499   true Chr3: 20631057-20636555
AT3G55620 3.0kb upstream 3.0kb upstream 3000   false Chr3: 20631057-20634056
AT3G55620 3.0kb downstream 3.0kb downstream 5499   true Chr3: 20634057-20639555
AT3G55620 3.0kb downstream 3.0kb downstream 3000   false Chr3: 20636556-20639555


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1 Pathways

Data Source: KEGG

Identifier Name
03008 Ribosome biogenesis in eukaryotes

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139