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Gene : AT3G10990 A. thaliana

Gene ID  ? AT3G10990
Brief Description  F-box associated ubiquitination effector family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G23960.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G10990 0.5kb upstream 0.5kb upstream 1034   true Chr3: 3446462-3447495
AT3G10990 0.5kb upstream 0.5kb upstream 500   false Chr3: 3446996-3447495
AT3G10990 0.5kb downstream 0.5kb downstream 1034   true Chr3: 3445962-3446995
AT3G10990 0.5kb downstream 0.5kb downstream 500   false Chr3: 3445962-3446461
AT3G10990 1.0kb upstream 1.0kb upstream 1534   true Chr3: 3446462-3447995
AT3G10990 1.0kb upstream 1.0kb upstream 1000   false Chr3: 3446996-3447995
AT3G10990 1.0kb downstream 1.0kb downstream 1534   true Chr3: 3445462-3446995
AT3G10990 1.0kb downstream 1.0kb downstream 1000   false Chr3: 3445462-3446461
AT3G10990 3.0kb upstream 3.0kb upstream 3534   true Chr3: 3446462-3449995
AT3G10990 3.0kb upstream 3.0kb upstream 3000   false Chr3: 3446996-3449995
AT3G10990 3.0kb downstream 3.0kb downstream 3534   true Chr3: 3443462-3446995
AT3G10990 3.0kb downstream 3.0kb downstream 3000   false Chr3: 3443462-3446461

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0