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Gene : TCP3 A. thaliana

Gene ID  ? AT1G53230
Brief Description  TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3" (TCP3); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor 4 (TAIR:AT3G15030.3).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterochronic regulation of leaf differentiation.  Source: TAIR, Jun 30, 2015.
Name  ? TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
TCP3 interactions with R2R3-MYBs lead to enhanced flavonoid production, which further negatively modulates the auxin response. 24118612

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G53230 0.5kb upstream 0.5kb upstream 2438   true Chr1: 19849788-19852225
AT1G53230 0.5kb upstream 0.5kb upstream 500   false Chr1: 19851726-19852225
AT1G53230 0.5kb downstream 0.5kb downstream 2438   true Chr1: 19849288-19851725
AT1G53230 0.5kb downstream 0.5kb downstream 500   false Chr1: 19849288-19849787
AT1G53230 1.0kb upstream 1.0kb upstream 2938   true Chr1: 19849788-19852725
AT1G53230 1.0kb upstream 1.0kb upstream 1000   false Chr1: 19851726-19852725
AT1G53230 1.0kb downstream 1.0kb downstream 2938   true Chr1: 19848788-19851725
AT1G53230 1.0kb downstream 1.0kb downstream 1000   false Chr1: 19848788-19849787
AT1G53230 3.0kb upstream 3.0kb upstream 4938   true Chr1: 19849788-19854725
AT1G53230 3.0kb upstream 3.0kb upstream 3000   false Chr1: 19851726-19854725
AT1G53230 3.0kb downstream 3.0kb downstream 4938   true Chr1: 19846788-19851725
AT1G53230 3.0kb downstream 3.0kb downstream 3000   false Chr1: 19846788-19849787

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139