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Gene : AT5G02520 A. thaliana

Gene ID  ? AT5G02520
Brief Description  dentin sialophosphoprotein-like protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1).  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • KNL2,
  • KINETOCHORE NULL 2

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Arabidopsis KNL2 colocalizes with cenH3 and is associated with centromeres during all stages of the mitotic cell cycle, except from metaphase to mid-anaphase. 24014547

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G02520 0.5kb upstream 0.5kb upstream 3464   true Chr5: 560679-564142
AT5G02520 0.5kb upstream 0.5kb upstream 500   false Chr5: 560679-561178
AT5G02520 0.5kb downstream 0.5kb downstream 3464   true Chr5: 561179-564642
AT5G02520 0.5kb downstream 0.5kb downstream 500   false Chr5: 564143-564642
AT5G02520 1.0kb upstream 1.0kb upstream 3964   true Chr5: 560179-564142
AT5G02520 1.0kb upstream 1.0kb upstream 1000   false Chr5: 560179-561178
AT5G02520 1.0kb downstream 1.0kb downstream 3964   true Chr5: 561179-565142
AT5G02520 1.0kb downstream 1.0kb downstream 1000   false Chr5: 564143-565142
AT5G02520 3.0kb upstream 3.0kb upstream 5964   true Chr5: 558179-564142
AT5G02520 3.0kb upstream 3.0kb upstream 3000   false Chr5: 558179-561178
AT5G02520 3.0kb downstream 3.0kb downstream 5964   true Chr5: 561179-567142
AT5G02520 3.0kb downstream 3.0kb downstream 3000   false Chr5: 564143-567142

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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Homology

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016