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Gene : DFD A. thaliana

Gene ID  ? AT3G55630
Brief Description  DHFS-FPGS homolog D  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? DHFS-FPGS homolog D (DFD); CONTAINS InterPro DOMAIN/s: Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, central (InterPro:IPR013221), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: DHFS-FPGS homolog B (TAIR:AT5G05980.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes one of the three folylpolyglutamate synthetase isoforms (FPGSs): FPGS1 (At5g05980, plastidic), FPGS2 (At3g10160, mitochondrial) and FPGS3 (At3g55630, cytosolic).  Source: TAIR, Jun 30, 2015.
Name  ? DHFS-FPGS homolog D
  • synonyms:
  • folylpolyglutamate synthetase 3,
  • FPGS3,
  • DHFS-FPGS homolog D,
  • ATDFD

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtDFB is the predominant FPGS isoform that generates polyglutamylated folate cofactors to support C1 metabolism. 21233333

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G55630 0.5kb upstream 0.5kb upstream 3386   true Chr3: 20636107-20639492
AT3G55630 0.5kb upstream 0.5kb upstream 500   false Chr3: 20636107-20636606
AT3G55630 0.5kb downstream 0.5kb downstream 3386   true Chr3: 20636607-20639992
AT3G55630 0.5kb downstream 0.5kb downstream 500   false Chr3: 20639493-20639992
AT3G55630 1.0kb upstream 1.0kb upstream 3886   true Chr3: 20635607-20639492
AT3G55630 1.0kb upstream 1.0kb upstream 1000   false Chr3: 20635607-20636606
AT3G55630 1.0kb downstream 1.0kb downstream 3886   true Chr3: 20636607-20640492
AT3G55630 1.0kb downstream 1.0kb downstream 1000   false Chr3: 20639493-20640492
AT3G55630 3.0kb upstream 3.0kb upstream 5886   true Chr3: 20633607-20639492
AT3G55630 3.0kb upstream 3.0kb upstream 3000   false Chr3: 20633607-20636606
AT3G55630 3.0kb downstream 3.0kb downstream 5886   true Chr3: 20636607-20642492
AT3G55630 3.0kb downstream 3.0kb downstream 3000   false Chr3: 20639493-20642492

Proteins

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Function

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2 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00790 Folate biosynthesis

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Expression

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Interactions

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Homology

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016