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Gene : BTI3 A. thaliana

Gene ID  ? AT5G41600
Brief Description  VIRB2-interacting protein 3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? VIRB2-interacting protein 3 (BTI3); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulan like protein B3 (TAIR:AT1G64090.1).  Source: TAIR, Jun 30, 2015.
Name  ? VIRB2-interacting protein 3
  • synonyms:
  • Reticulan like protein B4,
  • RTNLB4

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G41600 0.5kb upstream 0.5kb upstream 2380   true Chr5: 16635529-16637908
AT5G41600 0.5kb upstream 0.5kb upstream 500   false Chr5: 16635529-16636028
AT5G41600 0.5kb downstream 0.5kb downstream 2380   true Chr5: 16636029-16638408
AT5G41600 0.5kb downstream 0.5kb downstream 500   false Chr5: 16637909-16638408
AT5G41600 1.0kb upstream 1.0kb upstream 2880   true Chr5: 16635029-16637908
AT5G41600 1.0kb upstream 1.0kb upstream 1000   false Chr5: 16635029-16636028
AT5G41600 1.0kb downstream 1.0kb downstream 2880   true Chr5: 16636029-16638908
AT5G41600 1.0kb downstream 1.0kb downstream 1000   false Chr5: 16637909-16638908
AT5G41600 3.0kb upstream 3.0kb upstream 4880   true Chr5: 16633029-16637908
AT5G41600 3.0kb upstream 3.0kb upstream 3000   false Chr5: 16633029-16636028
AT5G41600 3.0kb downstream 3.0kb downstream 4880   true Chr5: 16636029-16640908
AT5G41600 3.0kb downstream 3.0kb downstream 3000   false Chr5: 16637909-16640908

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139