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Gene : GT-1 A. thaliana

Gene ID  ? AT1G13450
Brief Description  Homeodomain-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G25990.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes GT-1, a plant transcription factor that binds to one of the cis-acting elements, BoxII, which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2 )-dependent phosphorylation/dephosphorylation in response to light signals.  Source: TAIR, Jun 30, 2015.
Name  ? GT-1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G13450 0.5kb upstream 0.5kb upstream 3123   true Chr1: 4612731-4615853
AT1G13450 0.5kb upstream 0.5kb upstream 500   false Chr1: 4615354-4615853
AT1G13450 0.5kb downstream 0.5kb downstream 3123   true Chr1: 4612231-4615353
AT1G13450 0.5kb downstream 0.5kb downstream 500   false Chr1: 4612231-4612730
AT1G13450 1.0kb upstream 1.0kb upstream 3623   true Chr1: 4612731-4616353
AT1G13450 1.0kb upstream 1.0kb upstream 1000   false Chr1: 4615354-4616353
AT1G13450 1.0kb downstream 1.0kb downstream 3623   true Chr1: 4611731-4615353
AT1G13450 1.0kb downstream 1.0kb downstream 1000   false Chr1: 4611731-4612730
AT1G13450 3.0kb upstream 3.0kb upstream 5623   true Chr1: 4612731-4618353
AT1G13450 3.0kb upstream 3.0kb upstream 3000   false Chr1: 4615354-4618353
AT1G13450 3.0kb downstream 3.0kb downstream 5623   true Chr1: 4609731-4615353
AT1G13450 3.0kb downstream 3.0kb downstream 3000   false Chr1: 4609731-4612730

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Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016