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Gene : PSRP4 A. thaliana

Gene ID  ? AT2G38140
Brief Description  plastid-specific ribosomal protein 4  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? plastid-specific ribosomal protein 4 (PSRP4); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  Source: TAIR, Jun 30, 2015.
Curator Summary  ? plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete  Source: TAIR, Jun 30, 2015.
Name  ? plastid-specific ribosomal protein 4

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G38140 0.5kb upstream 0.5kb upstream 1265   true Chr2: 15980348-15981612
AT2G38140 0.5kb upstream 0.5kb upstream 500   false Chr2: 15980348-15980847
AT2G38140 0.5kb downstream 0.5kb downstream 1265   true Chr2: 15980848-15982112
AT2G38140 0.5kb downstream 0.5kb downstream 500   false Chr2: 15981613-15982112
AT2G38140 1.0kb upstream 1.0kb upstream 1765   true Chr2: 15979848-15981612
AT2G38140 1.0kb upstream 1.0kb upstream 1000   false Chr2: 15979848-15980847
AT2G38140 1.0kb downstream 1.0kb downstream 1765   true Chr2: 15980848-15982612
AT2G38140 1.0kb downstream 1.0kb downstream 1000   false Chr2: 15981613-15982612
AT2G38140 3.0kb upstream 3.0kb upstream 3765   true Chr2: 15977848-15981612
AT2G38140 3.0kb upstream 3.0kb upstream 3000   false Chr2: 15977848-15980847
AT2G38140 3.0kb downstream 3.0kb downstream 3765   true Chr2: 15980848-15984612
AT2G38140 3.0kb downstream 3.0kb downstream 3000   false Chr2: 15981613-15984612

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139