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Gene : CYL1 A. thaliana

Gene ID  ? AT5G13690
Brief Description  alpha-N-acetylglucosaminidase family / NAGLU family  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CYCLOPS 1 (CYL1); FUNCTIONS IN: alpha-N-acetylglucosaminidase activity; INVOLVED IN: seed development; LOCATED IN: vacuole; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-N-acetylglucosaminidase (InterPro:IPR007781).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes an enzyme that is predicted to act as an alpha-N-acetylglucosaminidase (NAGLU). An naglu mutant arrests early in seed development but does not appear to have male or female gametophytic defects. Transcript levels for this gene are increased during reproductive development.  Source: TAIR, Jun 30, 2015.
Name  ? CYCLOPS 1
  • synonyms:
  • NAGLU,
  • N-ACETYL-GLUCOSAMINIDASE

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
N-acetyl-glucosamines plays an important role in plant reproductive development. 18782908

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G13690 0.5kb upstream 0.5kb upstream 5118   true Chr5: 4415254-4420371
AT5G13690 0.5kb upstream 0.5kb upstream 500   false Chr5: 4415254-4415753
AT5G13690 0.5kb downstream 0.5kb downstream 5118   true Chr5: 4415754-4420871
AT5G13690 0.5kb downstream 0.5kb downstream 500   false Chr5: 4420372-4420871
AT5G13690 1.0kb upstream 1.0kb upstream 5618   true Chr5: 4414754-4420371
AT5G13690 1.0kb upstream 1.0kb upstream 1000   false Chr5: 4414754-4415753
AT5G13690 1.0kb downstream 1.0kb downstream 5618   true Chr5: 4415754-4421371
AT5G13690 1.0kb downstream 1.0kb downstream 1000   false Chr5: 4420372-4421371
AT5G13690 3.0kb upstream 3.0kb upstream 7618   true Chr5: 4412754-4420371
AT5G13690 3.0kb upstream 3.0kb upstream 3000   false Chr5: 4412754-4415753
AT5G13690 3.0kb downstream 3.0kb downstream 7618   true Chr5: 4415754-4423371
AT5G13690 3.0kb downstream 3.0kb downstream 3000   false Chr5: 4420372-4423371

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2 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00531 Glycosaminoglycan degradation

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016