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Gene : RPL34 A. thaliana

Gene ID  ? AT1G69620
Brief Description  ribosomal protein L34  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ribosomal protein L34 (RPL34); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane, large ribosomal subunit, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: Ribosomal protein L34e superfamily protein (TAIR:AT1G26880.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? putative 60S ribosomal protein L34  Source: TAIR, Jun 30, 2015.
Name  ? ribosomal protein L34

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G69620 0.5kb upstream 0.5kb upstream 2130   true Chr1: 26189275-26191404
AT1G69620 0.5kb upstream 0.5kb upstream 500   false Chr1: 26189275-26189774
AT1G69620 0.5kb downstream 0.5kb downstream 2130   true Chr1: 26189775-26191904
AT1G69620 0.5kb downstream 0.5kb downstream 500   false Chr1: 26191405-26191904
AT1G69620 1.0kb upstream 1.0kb upstream 2630   true Chr1: 26188775-26191404
AT1G69620 1.0kb upstream 1.0kb upstream 1000   false Chr1: 26188775-26189774
AT1G69620 1.0kb downstream 1.0kb downstream 2630   true Chr1: 26189775-26192404
AT1G69620 1.0kb downstream 1.0kb downstream 1000   false Chr1: 26191405-26192404
AT1G69620 3.0kb upstream 3.0kb upstream 4630   true Chr1: 26186775-26191404
AT1G69620 3.0kb upstream 3.0kb upstream 3000   false Chr1: 26186775-26189774
AT1G69620 3.0kb downstream 3.0kb downstream 4630   true Chr1: 26189775-26194404
AT1G69620 3.0kb downstream 3.0kb downstream 3000   false Chr1: 26191405-26194404


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1 Pathways

Data Source: KEGG

Identifier Name
03010 Ribosome

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139