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Gene : AT4G24710 A. thaliana

Gene ID  ? AT4G24710
Brief Description  pachytene checkpoint-like protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Chaperonin clpA/B (InterPro:IPR001270); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1).  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
PCH2 is required for remodelling of the chromosome axis during synaptonemal complex formation. [PCH2] 26182244


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G24710 0.5kb upstream 0.5kb upstream 4088   true Chr4: 12745547-12749634
AT4G24710 0.5kb upstream 0.5kb upstream 500   false Chr4: 12749135-12749634
AT4G24710 0.5kb downstream 0.5kb downstream 4088   true Chr4: 12745047-12749134
AT4G24710 0.5kb downstream 0.5kb downstream 500   false Chr4: 12745047-12745546
AT4G24710 1.0kb upstream 1.0kb upstream 4588   true Chr4: 12745547-12750134
AT4G24710 1.0kb upstream 1.0kb upstream 1000   false Chr4: 12749135-12750134
AT4G24710 1.0kb downstream 1.0kb downstream 4588   true Chr4: 12744547-12749134
AT4G24710 1.0kb downstream 1.0kb downstream 1000   false Chr4: 12744547-12745546
AT4G24710 3.0kb upstream 3.0kb upstream 6588   true Chr4: 12745547-12752134
AT4G24710 3.0kb upstream 3.0kb upstream 3000   false Chr4: 12749135-12752134
AT4G24710 3.0kb downstream 3.0kb downstream 6588   true Chr4: 12742547-12749134
AT4G24710 3.0kb downstream 3.0kb downstream 3000   false Chr4: 12742547-12745546


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0 Pathways

Data Source: KEGG

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Array Expression

RNA-seq Expression


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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016