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Gene : NAC062 A. thaliana

Gene ID  ? AT3G49530
Brief Description  NAC domain containing protein 62  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? NAC domain containing protein 62 (NAC062); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: TCV-interacting protein (TAIR:AT5G24590.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Transcription factor that serves as a molecular link between cold signals and pathogen resistance responses. Undergoes proteolytic processing triggered by cold-induced changes in membrane fluidity.  Source: TAIR, Jun 30, 2015.
Name  ? NAC domain containing protein 62
  • synonyms:
  • ANAC062,
  • NTM1 (NAC WITH TRANSMEMBRANE MOTIF 1)-LIKE 6,
  • NTL6,
  • NAC domain containing protein 62

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5 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
NTL6 activation is triggered by exposure to cold, and the transcriptionally active form of NTL6 induces the expression of PR genes by directly binding to the gene promoters and enhances plant resistance to pathogen infection. 19947982
NTL6 plays an integrative role in plant responses to both biotic and abiotic stress conditions. 20139739
The observations indicate that a metalloprotease activity is responsible for NTL6 processing in response to cold-induced changes in membrane fluidity. 20156199
Transgenic plants overproducing either NTL6 or its active form 6deltaC exhibit enhanced resistance to water-deficit conditions. 22967043
the membrane-associated transcription factor NAC062 relays endoplasmic reticulum (ER) stress signaling from the plasma membrane to the nucleus and plays important roles in regulating unfolded protein response (UPR)downstream gene expression. 24961665

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G49530 0.5kb upstream 0.5kb upstream 3017   true Chr3: 18362443-18365459
AT3G49530 0.5kb upstream 0.5kb upstream 500   false Chr3: 18364960-18365459
AT3G49530 0.5kb downstream 0.5kb downstream 3017   true Chr3: 18361943-18364959
AT3G49530 0.5kb downstream 0.5kb downstream 500   false Chr3: 18361943-18362442
AT3G49530 1.0kb upstream 1.0kb upstream 3517   true Chr3: 18362443-18365959
AT3G49530 1.0kb upstream 1.0kb upstream 1000   false Chr3: 18364960-18365959
AT3G49530 1.0kb downstream 1.0kb downstream 3517   true Chr3: 18361443-18364959
AT3G49530 1.0kb downstream 1.0kb downstream 1000   false Chr3: 18361443-18362442
AT3G49530 3.0kb upstream 3.0kb upstream 5517   true Chr3: 18362443-18367959
AT3G49530 3.0kb upstream 3.0kb upstream 3000   false Chr3: 18364960-18367959
AT3G49530 3.0kb downstream 3.0kb downstream 5517   true Chr3: 18359443-18364959
AT3G49530 3.0kb downstream 3.0kb downstream 3000   false Chr3: 18359443-18362442

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139